Whole-genome sequencing of Candida haemulonii species complex from Brazil and the United States: Genetic diversity and antifungal susceptibility.

Candida haemulonii complex species can be multidrug-resistant and cause infections such as candidemia. This study determined the genetic relationship between isolates from Brazil and the United States through whole-genome sequencing and performed antifungal susceptibility testing to investigate drug resistance. Contrary to what is widely described, most isolates were susceptible to azoles. However, an atypical susceptibility profile was found in 50% of Candida pseudohaemulonii strains, including resistance to the three echinocandins. Isolates from both countries formed distinct clusters with wide genetic diversity. Isolates from three hospitals in Brazil were clonal and involved in candidemia cases, pointing to the importance of improving hospital infection control measures and molecular identification.

Candida haemulonii complex species is worldwide distributed, and this study aimed to evaluate the resistance to antifungal drugs in cases from Brazil and the United States, and also compare their genetic relationships. A total of 50 strains were studied; most of them from Brazil were from cases of bloodstream infections, while the strains from the United States came from cases of wounds and may be associated with diabetic patients. The vast majority of strains were resistant to amphotericin B, one of the most effective drugs, and susceptible to fluconazole. In addition, 50% of C. pseudohaemulonii strains were resistant to echinocandins. The strains from Brazil and the United States had no genetic relationship and formed two distinct groups. In three Brazilian hospitals, strains were clonal, indicating an intra-hospital transmission. Our findings contribute to guiding therapy in bloodstream fungal infections caused by C. haemulonii species and alerting for nosocomial transmission of this yeast complex species.

Species and antifungal susceptibility profile of agents causing vulvovaginal candidiasis in a military population: a cross-sectional study.

Military women on active duty are exposed to constant physical and mental demands, which may predispose them to some infection risks, including vulvovaginal candidiasis (VVC), a pathology considered a global public health problem. To monitor the prevalent and emerging pathogens in VVC, this study aimed to evaluate the distribution of yeast species and their in vitro antifungal susceptibility profile. We studied 104 vaginal yeast specimens obtained during routine clinical examinations. The population was attended at the Medical Center of the Military Police, São Paulo, Brazil, and was divided into two groups: infected patients (VVC) and colonised patients. Species were identified by phenotypic and proteomic methods (MALDI-TOF MS) and susceptibility to eight antifungal drugs, including azoles, polyenes, and echinocandins, was determined using microdilution broth. Candida albicans stricto sensu was found to be the most frequently isolated species (55%), but we observed a considerable rate of other Candida species isolates (30%), including Candida orthopsilosis stricto sensu only in the infected group. There were also other rare genera such as Rhodotorula, Yarrowia, and Trichosporon (15%), of which Rhodotorula mucilaginosa was the most prevalent in both groups. Fluconazole and voriconazole had the highest activity against all species in both groups. Candida parapsilosis was the most susceptible species, except for amphotericin-B in the infected group. Of note, we observed unusual resistance in C. albicans. Our results have allowed us to compile an epidemiological database on the etiology of VVC to support the empirical treatment and improve the health care of military women.

Vulvovaginal candidiasis (VVC) is an infection caused by fungi, mainly Candida albicans. Our results show that fungi other than C. albicans can cause VVC. So, our findings may help to choose the most appropriate treatment, as some may be resistant, to improve the quality of life of military women.

Aspects related to biofilm production and antifungal susceptibility of clinically relevant yeasts of the genus Trichosporon.

Trichosporonosis corresponds to a systemic fungal disease that leads to high mortality rates and is frequently associated with medical devices. It affects immunosuppressed patients in particular and is strongly linked to acquired human immunodeficiency, organ and tissue transplants, and malignant hematologic diseases such as leukemia and lymphomas. Trichosporon infections have been increasingly reported worldwide; however, little information is available either about their characteristics or the causative microorganism. Thus, the aims of the present study were: to investigate 59 yeasts of the genus Trichosporon by verifying the biofilm formation capacity of isolates; to analyze the susceptibility patterns of planktonic cells against the antifungals fluconazole, itraconazole, amphotericin-B, voriconazole, and caspofungin by comparing European Committee for Antimicrobial Susceptibility Testing (EUCAST) broth microdilution technique with the commercial method Etest; and to assess the susceptibility patterns of biofilm cells (sessile) against the same antifungals through broth microdilution. The ability to form biofilm on the surface of polystyrene plates was noted for all isolates, and 54.3% of samples were considered strong producers. Comparison between the antifungal susceptibility techniques evidenced that Etest showed higher and discordant minimum inhibitory concentrations (MICs) from those obtained by the microdilution method, especially for fluconazole, itraconazole, and caspofungin. Considering the susceptibility of biofilms, most species had high MIC50 and MIC90 against the tested antifungals, showing 4-to-66-fold higher concentrations for amphotericin B and 2-to-33-fold greater concentrations for caspofungin. These results highlight the importance of further studies with Trichosporon spp. for comparison between laboratory findings and in vivo response, considering both the susceptibility tests and the behavior of biofilm cells against drugs.

This study investigated 59 isolates of the medically important yeast Trichosporon in relation to their ability to form biofilms and the susceptibility of biofilms to antifungal agents. All isolates were able to produce biofilms and biofilms showed lower antifungal susceptibility.

Antifungal activity of liriodenine on clinical strains of Cryptococcus neoformans and Cryptococcus gattii species complexes.

Background: Cryptoccocal meningitis continues to present high incidence among AIDS patients. The treatment of choice is the synergistic combination of flucytosine (5-FC) with amphotericin B deoxycholate (AmBd) or its lipid formulations. However, 5-FC is unavailable in many countries and AmB demands hospitalization. The combination of AmB with the fungistatic fluconazole (FLC) or the use of high FLC daily doses alone became the choice. Nonetheless, sterilization of cerebrospinal fluid is delayed with FLC monotherapy, mainly with high fungal burden. These findings suggest the search for new antifungal compounds, such as liriodenine. Methods: Liriodenine antifungal activity was evaluated by three procedures: determining the minimum inhibitory concentration (MIC) on 30 strains of the Cryptococcus neoformans (C. neoformans) complex and 30 of the Cryptococcus gattii (C. gattii) complex, using EUCAST methodology and amphotericin B deoxycholate as control; performing the time-kill methodology in two strains of the C. neoformans complex and one of the C. gattii complex; and injury to cryptococcal cells, evaluated by transmission electron microscopy (TEM). Liriodenine absorption and safety at 0.75 and 1.50 mg.kg-1 doses were evaluated in BALB/c mice. Results: Liriodenine MICs ranged from 3.9 to 62.5 µg.mL-1 for both species complexes, with no differences between them. Time-kill methodology confirmed its concentration-dependent fungicidal effect, killing all the strains below the limit of detection (33 CFU.mL-1) at the highest liriodenine concentration (32-fold MIC), with predominant activity during the first 48 hours. Liriodenine induced severe Cryptococcus alterations - cytoplasm with intense rarefaction and/or degradation, injury of organelles, and presence of vacuoles. Liriodenine was better absorbed at lower doses, with no histopathological alterations on the digestive tract. Conclusion: The fungicidal activity confirmed by time-kill methodology, the intense Cryptococcus injury observed by TEM, the absorption after gavage administration, and the safety at the tested doses indicate that the liriodenine molecule is a promising drug lead for development of anticryptococcal agents.

Fungi in dialysis water and dialysate: occurrence, susceptibility to antifungal agents and biofilm production capacity.

The aim of this study was to investigate the occurrence of fungi in dialysis water and dialysate, in addition to evaluating the susceptibility to antifungals and the biofilm production capacity of isolated microorganisms. The samples were collected in three hemodialysis units in Bauru (Brazil), every 15 days (July 2017-June 2018) at post-reverse osmosis, reuse, and dialysate points. The fungi were isolated by spread plate on Sabouraud dextrose agar. Filamentous fungi were phenotypically identified and yeasts were subjected to molecular evaluation of the ITS region. Susceptibility test to antifungals was carried out by the broth microdilution method and biofilm production capacity was evaluated in microtiter plates using crystal violet staining. Fungi were isolated in 52/216 (24.1%) samples, with an average count of 16.3 (10-40) CFU/mL. Overall, 61 microorganisms were identified, with 54 (88.5%) filamentous fungi and 7 (11.5%) yeasts. The main genera included were Penicillium, Cladosporium, Scedosporium, Rhinocladiella, Fusarium, and Emmonsia. Most isolates showed high values of minimum inhibitory concentration for 5-flucytosine and fluconazole and 35/45 (77.8%) isolates were classified as strong producers of biofilm. In order to increase the safety of the dialysis process, the adoption of control measures and monitoring of fungi in hemodialysis fluids is suggested.

Fungi in dialysis water and dialysate: occurrence, susceptibility to antifungal agents and biofilm production capacity

The aim of this study was to investigate the occurrence of fungi in dialysis water and dialysate, in addition to evaluating the susceptibility to antifungals and the biofilm production capacity of isolated microorganisms. The samples were collected in three hemodialysis units in Bauru (Brazil), every 15 days (July 2017­June 2018) at post-reverse osmosis, reuse, and dialysate points. The fungi were isolated by spread plate on Sabouraud dextrose agar. Filamentous fungi were phenotypically identified and yeasts were subjected to molecular evaluation of the ITS region. Susceptibility test to antifungals was carried out by the broth microdilution method and biofilm production capacity was evaluated in microtiter plates using crystal violet staining. Fungi were isolated in 52/216 (24.1%) samples, with an average count of 16.3 (10­40) CFU/ mL. Overall, 61 microorganisms were identified, with 54 (88.5%) filamentous fungi and 7 (11.5%) yeasts. The main genera included were Penicillium, Cladosporium, Scedosporium, Rhinocladiella, Fusarium, and Emmonsia. Most isolates showed high values of minimum inhibitory concentration for 5-flucytosine and fluconazole and 35/45 (77.8%) isolates were classified as strong producers of biofilm. In order to increase the safety of the dialysis process, the adoption of control measures and monitoring of fungi in hemodialysis fluids is suggested.

Evaluation of Vitek MS for Differentiation of Cryptococcus neoformans and Cryptococcus gattii Genotypes.

Cryptococcus neoformans and Cryptococcus gattii are the main pathogenic species of invasive cryptococcosis among the Cryptococcus species. Taxonomic studies have shown that these two taxa have different genotypes or molecular types with biological and ecoepidemiological peculiarities. Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) has been proposed as an alternative method for labor-intensive methods for C. neoformans and C. gattii genotype differentiation. However, Vitek MS, one of the commercial MALDI-TOF MS instruments, has not been yet been evaluated for this purpose. Thus, we constructed an in-house database with reference strains belonging to the different C. neoformans (VNI, VNII, VNIII, and VNIV) and C. gattii (VGI, VGII, VGIII, and VGIV) major molecular types by using the software Saramis Premium (bioMérieux, Marcy-l'Etoile, France). Then, this new database was evaluated for discrimination of the different genotypes. Our in-house database provided correct identification for all C. neoformans and C. gattii genotypes; however, due to the intergenotypic mass spectral similarities, a careful postanalytic evaluation is necessary to provide correct genotype identification.

Canine visceral leishmaniasis in Araçatuba, state of São Paulo, Brazil, and its relationship with characteristics of dogs and their owners: a cross-sectional and spatial analysis using a geostatistical approach.

BACKGROUND: The incidence of visceral leishmaniasis (VL), one of the most important neglected diseases worldwide, is increasing in Brazil. The objectives of this study were to determine the canine VL (CanL) seroprevalence in an urban area of Araçatuba municipality and to evaluate its relationship with the characteristics of dogs and their owners. RESULTS: The CanL seroprevalence in the study area was 0.081 (95% credible interval [CI]: 0.068-0.096). The following covariates/categories were positively associated with the occurrence of a seropositive dog: more than 10 dogs that had lived in the house (odds ratio [OR] = 2.36; 95% CI: 1.03-5.43) (baseline: 0-10 dogs); house with dogs that previously died of VL (OR = 4.85; 95% CI: 2.65-8.86) or died of causes other than old age (OR = 2.26; 95% CI: 1.12-4.46) (baseline: natural or no deaths); dogs that spent the day in a sheltered backyard (OR = 2.14; 95% CI: 1.05-4.40); dogs that spent the day in an unsheltered backyard or the street (OR = 2.67; 95% CI: 1.28-5.57) (baseline: inside home). Spatial dependence among observations occurred within about 45.7 m. CONCLUSIONS: The number of dogs that had lived in the house, previous deaths by VL or other cause, and the place the dog stayed during the day were associated with the occurrence of a VL seropositive dog. The short-distance spatial dependence could be related to the vector characteristics, producing a local neighbourhood VL transmission pattern. The geostatistical approach in a Bayesian context using integrated nested Laplace approximation (INLA) allowed to identify the covariates associated with VL, including its spatially dependent transmission pattern.

Factors associated with positivity for canine visceral leishmaniosis in an endemic area in Brazil.

Visceral leishmaniosis (VL) is a public health problem and its occurrence depends primarily on the presence of the vector and susceptible hosts; in the urban environment, the dog is the main reservoir. This study aimed to analyze the distribution of canine visceral leishmaniosis (CVL) and factors associated with it in an urban area endemic for VL. Analysis of the variables was based on 2755 epidemiological records of dogs positive and negative for CVL over a three-year period (2009, 2010 and 2011). A dog was considered positive when it presented amastigotes in the cytological examination of lymph node biopsy and/or was seropositive by immunoenzymatic and indirect immunofluorescence assays. CVL positive dogs were observed throughout the town, but significant differences were observed between the sectors analyzed (P<0.0001), with two sectors showing higher positivity. CVL prevalence was 35.9% and was significantly associated with age and breed (P<0.0001). Concerning symptoms, 44.3% of symptomatic dogs were positive for LV (P<0.0001) in an urban area endemic for this zoonosis.

Serological Evidence of Infection by Paracoccidioides brasiliensis in Dogs with Leishmaniasis.

Paracoccidioidomycosis is a systemic mycosis prevalent in Latin American countries, caused by the dimorphic fungi Paracoccidioides brasiliensis and P. lutzii. The habitat of these fungi in nature remains undefined, although it is believed that infection occurs by inhalation of infective propagules present in soil. Sentinel animals, such as dogs, can be valuable epidemiological markers of paracoccidioidomycosis. Taking into account that paracoccidioidomycosis and visceral leishmaniasis may occur in the same area, the objective of this study was to evaluate the occurrence of P. brasiliensis infection in dogs positive for Leishmania sp. Serum samples of dogs positive (n = 199) and negative (n = 101) for Leishmania sp. were analyzed by the immunodiffusion test using P. brasiliensis exoantigen, and 22 samples (7.3%) were positive. The serum samples positive in the immunodiffusion test were also analyzed by Western blotting using the P. brasiliensis gp43 recombinant protein, and 86% of the samples were positive. A high positive correlation (r = 0.96) between positivity for Leishmania sp. and P. brasiliensis was observed. These data suggest an association between leishmaniasis and paracoccidioidomycosis in dogs.

Prevalence, distribution and antifungal susceptibility profiles of Candida parapsilosis, Candida orthopsilosis and Candida metapsilosis bloodstream isolates.

The Candida parapsilosis group encompasses three species: C. parapsilosis, Candida orthopsilosis and Candida metapsilosis. These species are phenotypically indistinguishable, and molecular methods are needed for their detection. We analysed 152 unique blood culture isolates of the C. parapsilosis group obtained during 1997-2011. The isolates were screened by PCR amplification of the gene encoding secondary alcohol dehydrogenase, followed by digestion with the restriction enzyme BanI. Isolates with RFLP patterns distinct from those of the C. parapsilosis group were characterized as C. parapsilosis sensu stricto (90.8 %), C. orthopsilosis (8.6 %) and C. metapsilosis (0.6 %). Antifungal susceptibility tests indicated that all isolates were susceptible to itraconazole, amphotericin B and caspofungin. Although C. orthopsilosis and C. metapsilosis isolates were susceptible to fluconazole, higher MICs (≥2 mg l(-1)) were observed for C. orthopsilosis. Three isolates (2.0 %) of C. parapsilosis sensu stricto were resistant to voriconazole. Five C. parapsilosis isolates (3.3 %) were intermediate, and a single isolate (0.7 %) was resistant (MIC 16 mg l(-1)) to fluconazole. These data were confirmed using reference strains. It was observed that C. parapsilosis isolates were less susceptible to all triazoles, and this finding deserves further attention to assess the appearance of cross-resistance phenomena. In conclusion, C. metapsilosis and C. orthopsilosis are involved in a small but significant number of invasive infections in Brazil.

Estudo retrospectivo de dez anos de candidemia em hospital terciário de Campo Grande, MS / A retrospective review of ten years of candidemia in tertiary hospital in Campo Grande, MS

Infecções fúngicas de corrente sanguínea (ICS) incluem as candidemias, denominadas também candidíases hematogênicas, desde que seus principais agentes são espécies do gênero Candida. Espécies desse gênero estão associadas a um dos principais quadros de infecção hospitalar, tendo sido relatado como quarto agente de infecções de corrente sanguínea nos Estados Unidos. A ocorrência da candidemia varia conforme a região geográfica, a categoria do hospital, tipo de paciente, unidade hospitalar e fatores de risco para a doença. Outro fato que interfere na taxa da doença é a qualidade do diagnóstico, pois a confirmação laboratorial da candidemia nem sempre é possível, desde que, muitas hemoculturas não permitem o isolamento do agente. Este estudo teve como objetivo determinar as espécies e sensibilidade de leveduras causadoras de infecção de corrente sanguínea no estado de Mato Grosso do Sul no período de 10 anos. A ocorrência de cepas de C. dubliniensis, analisada por PCR dentre 44 fenótipos de C. albicans inão foi observada neste estudo. Espécies crípticas do complexo C. parapsilosis foram investigadas em 37 isolados por PCR-RFLP, demonstrando ocorrência de C. orthopsilosis (8%) mas não de C. metapsilosis. A sensibilidade a fluconazol, itraconazol, voriconazol determinada por microdiluição (AFST-EUCAST) foi alta para todas as espécies, sendo maior para C. albicans, C. tropicalis, C. glabrata (100%) e menor para C. parapsilosis (92,6%). Resistência foi observada apenas para voriconazol em 1 isolado de C. parapsilosis e no único isolado de C. krusei. Caspofungina foi avaliada apenas contra C. parapsilosis e C.orthopsilosis¸mostrando-se eficaz em todos os isolados. A eficácia de anfotericina B foi alta (100%) no método de microdiluição AFST-EUCAST, mas variável e espécie-dependente nos testes de curvas de morte. Nesse método o efeito fungicida (h) foi mais rápido para Candida albicans e mais lento para C. glabrata eC. parapsilosis. Conclui-se que a distribuição...

Avaliação da eficácia in vitro de butenafina ante os agentes de micoses cutâneas prevalentes no Brasil / Evaluation of in vitro efficacy of butenafine on the more prevalent cutaneous mycosis in Brazil

O tratamento de micoses cutâneas é realizado com antifúngicos orais ou tópicos. A butenafina, da classe das benzilaminas, é um novo medicamento de uso tópico com eficácia clínica comprovada em casos de dermatomicoses. O objetivo desse estudo foi investigar a atividade ?in vitro? da butenafina em dermatófitos, outros filamentosos ou leveduras, agentes de micoses de pele e unha e compará-la a outros três antifúngicos isoconazol, ciclopirox olamina e oxiconazol. A suscetibilidade aos antifúngicos foi avaliada por métodos de referência de microdiluição M38-A2 (NCCLS, 2002) e M27-A3 (CLSI-2008) para determinação da concentração inibitória mínima (MIC). Um método de triagem por disco-difusão (M44-A, CLSI, 2002) foi avaliado diante dos padrões, com vistas a sua utilização em laboratórios de rotina. Discos contendo as drogas antifúngicas foram preparados em concentrações de 0,125 a 100 µg e ensaiados, em duplicata contra todas as amostras de fungos, e os resultados foram comparados com o valor de MIC correspondente à dupla antifúngico-espécie. O disco na concentração de 2 mg permitiu identificação de perfis distintos de sensibilidade à butenafina, sendo indicado para uso em rotina. A maioria (64%) das espécies, incluindo dermatófitos (Trichophyton mentagrophytes, T. rubrum, T. violaceum, Microsporum canis), fungos não dermatófitos (Scytalidium lignicola, Fusarium) e leveduras (Candida glabrata, C.guilliermondii, C.parapsilosis), foi inibida em baixas concentrações (MIC 0,25 mg/mL), correspondendo a halos de inibição de até 60mm de diâmetro frente a butenafina. Para ciclopirox, a maioria (72%) das espécies não formou halo de inibição, com MICs acima de 0,25 µg/mL melhor resultado foi obtido com T. violaceum (MIC 0,06 mg/mL, halo 20 mm). A maior eficácia (100% de inibição) contra dermatófitos foi observada em butenafina e isoconazol oxiconazol inibiu 88,9% das amostras de dermatófitos com menor desempenho ante a T. mentagrophytes. Butenafina, isoconazol e oxiconazol foram mais ativas do que ciclopirox frente aos dermatófitos, quando verificadas as concentrações necessárias para inibir 50% e 90% (MIC50 e MIC90) das amostras. Agentes oportunistas, S. lignicola e Aureobasidium pullulans, foram sensíveis à butenafina, isoconazol e oxiconazol, não sendo inibidos por ciclopirox. Butenafina foi a única droga capaz de inibir, em baixas concentrações (MIC 0,25 mg/mL halo 14 mm), as duas amostras de Fusarium spp., fungo filamentoso não dermatófito de difícil controle terapêutico, principalmente, nos casos de onicomicose persistente os outros antifúngicos ensaiados apresentaram MIC acima de 16 mg/mL para esse gênero. Para Candida albicans, observou-se que butenafina, em altas concentrações, apresentou atividade inibitória maior se comparada a ciclopirox. Conclui-se que discos com 2 mg de butenafina permitem a classificação de fungos, filamentosos e leveduras, em categorias distintas de suscetibilidade, sendo útil para testes de triagem de cepas menos sensíveis, desde que mostrou boa correlação com os métodos de referência. Os testes de sensibilidade in vitro comprovaram a alta eficiência de butenafina contra agentes de micoses cutâneas, em particular, contra os principais agentes: dermatófitos. Estudos de correlação clínico-laboratorial poderão contribuir para um futuro consenso de critério interpretativo para valores de MIC de butenafina, definindo pontos de corte de sensibilidade.